Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5744
Gene Symbol: PTHLH
PTHLH
0.180 GeneticVariation disease BEFREE Isolated brachydactyly type E (BDE), characterized by shortened metacarpals and/or metatarsals, consists in a small proportion of patients with Homeobox D13 (HOXD13) or parathyroid-hormone-like hormone (PTHLH) mutations. 31283647 2019
Entrez Id: 4920
Gene Symbol: ROR2
ROR2
0.160 Biomarker disease BEFREE As ROR2 plays a key role in ossification of the distal limbs and is associated with brachydactylies in humans, it was a reasonable candidate for IH. 31798639 2019
Entrez Id: 7227
Gene Symbol: TRPS1
TRPS1
0.130 GeneticVariation disease BEFREE Our findings, in addition to identifying the genetic cause of brachydactyly in two unrelated kindreds, emphasize the role of pathogenic TRPS1 variants in the development of brachydactyly type E and highlight the GATA DNA-binding region of TRPS1 protein with respect to phenotype-genotype correlation. 30914275 2019
Entrez Id: 54496
Gene Symbol: PRMT7
PRMT7
0.120 GeneticVariation disease BEFREE We report a patient with short stature, psychomotor delay, hearing loss and brachydactyly, for whom whole exome sequencing detected two mutations in PRMT7 and parental segregation studies detected biallelic mutation inheritance. 30006058 2019
Entrez Id: 145173
Gene Symbol: B3GLCT
B3GLCT
0.110 GeneticVariation disease BEFREE Peters plus syndrome (MIM #261540 PTRPLS), characterized by defects in eye development, prominent forehead, hypertelorism, short stature, and brachydactyly, is caused by mutations in the β3-glucosyltransferase (B3GLCT) gene. 31600785 2019
Entrez Id: 49855
Gene Symbol: SCAPER
SCAPER
0.100 CausalMutation disease CLINVAR SCAPER localizes to primary cilia and its mutation affects cilia length, causing Bardet-Biedl syndrome. 30723319 2019
Entrez Id: 5741
Gene Symbol: PTH
PTH
0.060 GeneticVariation disease BEFREE Herein we report two unrelated Turkish females who presented with brachydactyly type E and vitamin D deficiency in the absence of marked alterations in serum calcium, phosphate, and parathyroid hormone. 30914275 2019
Entrez Id: 10236
Gene Symbol: HNRNPR
HNRNPR
0.010 Biomarker disease BEFREE Here, we report four unrelated individuals who have truncating or missense variants in the same C-terminal region of hnRNPR and who have multisystem developmental defects including abnormalities of the brain and skeleton, dysmorphic facies, brachydactyly, seizures, and hypoplastic external genitalia. 31079900 2019
Entrez Id: 25914
Gene Symbol: RTTN
RTTN
0.010 GeneticVariation disease BEFREE Herein, we report on a consanguineous family with three adult members, age 43, 57, and 60 years respectively, with primary microcephaly, developmental delay, primordial dwarfism, and brachydactyly segregating a homozygous splice site variant NM_173630.3:c.5648-5T>A in RTTN. 30927481 2019
Entrez Id: 8321
Gene Symbol: FZD1
FZD1
0.010 Biomarker disease BEFREE Our results indicate that FZD1 could be involved in the pathological process of phalanges tuberositas and brachydactylia and may provide new insight into the pathogenesis of articular cartilage destruction observed in patients with KBD. 30719180 2019
Entrez Id: 55278
Gene Symbol: QRSL1
QRSL1
0.010 GeneticVariation disease BEFREE Our findings, in addition to identifying the genetic cause of brachydactyly in two unrelated kindreds, emphasize the role of pathogenic TRPS1 variants in the development of brachydactyly type E and highlight the GATA DNA-binding region of TRPS1 protein with respect to phenotype-genotype correlation. 30914275 2019
Entrez Id: 658
Gene Symbol: BMPR1B
BMPR1B
0.130 GeneticVariation disease BEFREE BMPR1B is known to be responsible for autosomal dominant brachydactyly and autosomal recessive acromesomelic chondrodysplasia. 29581481 2018
Entrez Id: 5139
Gene Symbol: PDE3A
PDE3A
0.120 GeneticVariation disease BEFREE We report a novel PDE3A gene mutation in a mother and daughter affected with dominant brachydactyly of the hands and feet, a short stature, and hypertension. 30209282 2018
Entrez Id: 176
Gene Symbol: ACAN
ACAN
0.110 GeneticVariation disease BEFREE Heterozygous aggrecan variants are associated with short stature and brachydactyly: Description of 16 probands and a review of the literature. 29464738 2018
Entrez Id: 860
Gene Symbol: RUNX2
RUNX2
0.110 GeneticVariation disease BEFREE A three-generation family with metaphyseal dysplasia, maxillary hypoplasia and brachydactyly (MDMHB) due to intragenic RUNX2 duplication. 29891876 2018
Entrez Id: 5741
Gene Symbol: PTH
PTH
0.060 Biomarker disease BEFREE Proximal renal tubular resistance to PTH and thus hypocalcemia and hyperphosphatemia, frequently in presence of brachydactyly, ectopic ossification, early-onset obesity, or short stature are common features of PHP. 30390819 2018
Entrez Id: 658
Gene Symbol: BMPR1B
BMPR1B
0.130 GeneticVariation disease BEFREE CGH and SNP analyses identified a large intragenic deletion in a different BMP Type 1 receptor gene, BMP Receptor 1B/Activin-like kinase 6 (BMPR1B/ALK6), a gene associated with a variable spectrum of autosomal dominant brachydactyly phenotypes. 28473268 2017
Entrez Id: 54496
Gene Symbol: PRMT7
PRMT7
0.120 Biomarker disease BEFREE Loss of the arginine methyltranserase PRMT7 causes syndromic intellectual disability with microcephaly and brachydactyly. 27718516 2017
Entrez Id: 5144
Gene Symbol: PDE4D
PDE4D
0.110 GeneticVariation disease BEFREE Type 2 acrodysostosis (ACRDYS2), a rare developmental skeletal dysplasia characterized by short stature, severe brachydactyly and facial dysostosis, is caused by mutations in the phosphodiesterase (PDE) 4D (PDE4D) gene. 29016851 2017
Entrez Id: 5741
Gene Symbol: PTH
PTH
0.060 Biomarker disease BEFREE PHP-Ia and PHP-Ic are characterized by: End-organ resistance to endocrine hormones including parathyroid hormone (PTH), thyroid-stimulating hormone (TSH), gonadotropins (LH and FSH), growth hormone-releasing hormone (GHRH), and CNS neurotransmitters (leading to obesity and variable degrees of intellectual disability and developmental delay); and The Albright hereditary osteodystrophy (AHO) phenotype (short stature, round facies, and subcutaneous ossifications) and brachydactyly type E (shortening mainly of the 4th and/or 5th metacarpals and metatarsals and distal phalanx of the thumb). 30581325 2017
Entrez Id: 2691
Gene Symbol: GHRH
GHRH
0.020 Biomarker disease BEFREE PHP-Ia and PHP-Ic are characterized by: End-organ resistance to endocrine hormones including parathyroid hormone (PTH), thyroid-stimulating hormone (TSH), gonadotropins (LH and FSH), growth hormone-releasing hormone (GHRH), and CNS neurotransmitters (leading to obesity and variable degrees of intellectual disability and developmental delay); and The Albright hereditary osteodystrophy (AHO) phenotype (short stature, round facies, and subcutaneous ossifications) and brachydactyly type E (shortening mainly of the 4th and/or 5th metacarpals and metatarsals and distal phalanx of the thumb). 30581325 2017
Entrez Id: 6046
Gene Symbol: BRD2
BRD2
0.010 Biomarker disease BEFREE PHP-Ia and PHP-Ic are characterized by: End-organ resistance to endocrine hormones including parathyroid hormone (PTH), thyroid-stimulating hormone (TSH), gonadotropins (LH and FSH), growth hormone-releasing hormone (GHRH), and CNS neurotransmitters (leading to obesity and variable degrees of intellectual disability and developmental delay); and The Albright hereditary osteodystrophy (AHO) phenotype (short stature, round facies, and subcutaneous ossifications) and brachydactyly type E (shortening mainly of the 4th and/or 5th metacarpals and metatarsals and distal phalanx of the thumb). 30581325 2017
Entrez Id: 2296
Gene Symbol: FOXC1
FOXC1
0.010 AlteredExpression disease BEFREE The duplication involves the gene FOXC1, expressed during the osteoblast differentiation, which appears a potential candidate gene for brachydactyly. 28111183 2017
Entrez Id: 80144
Gene Symbol: FRAS1
FRAS1
0.010 GeneticVariation disease BEFREE We note severe brachydactyly is a manifestation of Fraser syndrome and found a novel homozygous splice site variation c.3293-2A>T in FRAS1. 27624506 2017
Entrez Id: 5744
Gene Symbol: PTHLH
PTHLH
0.180 GeneticVariation disease BEFREE Disease-causing variants and haploinsufficiency of PTHLH are known to cause brachydactyly type E and short stature. 26733284 2016